Total Genotyping Solution for Mycobacterium tuberculosis ver. 2

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  • MiSeq read recommended.
  • Input your sequence reads (Only .fastq.gz up to 4GBytes in total are acceptable).
  • Input sequences should be ≥300mer to obtain correct results for IS6110 insertion sites and VNTR.

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This tool is for Research Use Only. It has not been approved, cleared, or licensed by any regulatory authority. By submitting sequence data the user acknowledges no intended medical purpose or objective such as clinical diagnosis, patient management, or human clinical trials.
Some outcomes from your analysis may be used for debugging and to improve the efficiency of our tool but not for any other purpose. The result of analysis and data submitted will be removed after 7 days.

PLoS ONE 10(11): e0142951.

Access information

Phylogenetic tree of the original data set.

Reference genome: Mycobacterium tuberculosis H37Rv, complete genome (NC_000962.3)

  • SNV allele table (3.4MBytes) from 78 representative strains.
  • Phylocore genome tree by RAxML (bootstrap test 1000 times) in PDF, PNG or Newick format.
  • Repeat regions that are eliminated from the SNV site search in Microsoft Excel format (96.8KBytes).
  • If you have any probrem on this site, please contact the webmaster.
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