Total Genotyping Solution for Mycobacterium tuberculosis ver. 2

Samples results

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  • MiSeq read recommended.
  • Input your sequence reads (Only .fastq.gz up to 4GBytes in total are acceptable).
  • Input sequences should be ≥300mer to obtain correct results for IS6110 insertion sites and VNTR.

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This tool is for Research Use Only. It has not been approved, cleared, or licensed by any regulatory authority. By submitting sequence data the user acknowledges no intended medical purpose or objective such as clinical diagnosis, patient management, or human clinical trials.

Citation:
PLoS ONE 10(11): e0142951.
doi:10.1371/journal.pone.0142951

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Phylogenetic tree of the original data set.

Reference genome: Mycobacterium tuberculosis H37Rv, complete genome (NC_000962.3)

  • SNV allele table (3.4MBytes) from 78 representative strains.
  • Phylocore genome tree by RAxML (bootstrap test 1000 times) in PDF, PNG or Newick format.
  • Repeat regions that are eliminated from the SNV site search in Microsoft Excel format (96.8KBytes).
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