TGS-TB![]() |
TGS-TB v2 demo |
Strain | Raw reads | After quality trimming |
Removal of excess reads (target: 100×) |
Mapped reads | H37Rv reference genome (NC_000962.3) 4,411,532 bp |
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Covered region | Avg. depth | ||||||
Strain_A | 1,547,940 | 1,343,742 | 1,343,742 | 1,337,869 | 4,375,571 | 64.3× | |
86.81% | 86.81% | 86.43% | 99.18% | ||||
Strain_B | 1,092,148 | 1,017,728 | 1,017,728 | 1,012,408 | 4,386,485 | 55.1× | |
93.19% | 93.19% | 92.70% | 99.43% | ||||
Strain_C | 3,966,344 | 3,634,288 | 2,083,926 | 2,068,591 | 4,370,066 | 109.4× | |
91.63% | 52.54% | 52.15% | 99.06% | ||||
Strain_D | 3,473,398 | 3,343,440 | 2,136,823 | 2,125,800 | 4,371,932 | 109.3× | |
96.26% | 61.52% | 61.20% | 99.10% |
SNV sites | Original | Effective | |
Original dataset | 21,805 | 21,240 | 97.41% |
Additional | - | 599 | |
Total | 21,839 |